Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Alejandra Zárate-Potes; Luis Fernando Cadavid

doi:10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Alejandra Zárate-Potes
, Luis Fernando Cadavid

Biology

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding (ISBN) › peer-review

2 Citations (Scopus)

Abstract

Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....

Original language	English
Title of host publication	Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013
Publisher	Springer Verlag
Pages	239-245
Number of pages	7
ISBN (Print)	9783319015675
DOIs	https://doi.org/10.1007/978-3-319-01568-2_34
Publication status	Published - 1 Jan 2014
Event	2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013 - Manizales, Colombia Duration: 25 Sept 2013 → 27 Sept 2013

Publication series

Name	Advances in Intelligent Systems and Computing
Volume	232
ISSN (Print)	2194-5357

Conference

Conference	2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013
Country/Territory	Colombia
City	Manizales
Period	25/09/13 → 27/09/13

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 14 Life Below Water

Keywords

Cnidaria
High throughput sequencing
Hydractinia symbiolongicarpus
Immunology
Transcriptomics

Access to Document

10.1007/978-3-319-01568-2_34

Cite this

Zárate-Potes, A., & Cadavid, L. F. (2014). Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. In Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013 (pp. 239-245). (Advances in Intelligent Systems and Computing; Vol. 232). Springer Verlag. https://doi.org/10.1007/978-3-319-01568-2_34

Zárate-Potes, Alejandra ; Cadavid, Luis Fernando. / Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag, 2014. pp. 239-245 (Advances in Intelligent Systems and Computing).

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abstract = "Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....",

keywords = "Cnidaria, High throughput sequencing, Hydractinia symbiolongicarpus, Immunology, Transcriptomics",

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Zárate-Potes, A & Cadavid, LF 2014, Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. in Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Advances in Intelligent Systems and Computing, vol. 232, Springer Verlag, pp. 239-245, 2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013, Manizales, Colombia, 25/09/13. https://doi.org/10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. / Zárate-Potes, Alejandra; Cadavid, Luis Fernando.
Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag, 2014. p. 239-245 (Advances in Intelligent Systems and Computing; Vol. 232).

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding (ISBN) › peer-review

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N2 - Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....

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KW - Cnidaria

KW - High throughput sequencing

KW - Hydractinia symbiolongicarpus

KW - Immunology

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ER -

Zárate-Potes A, Cadavid LF. Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. In Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag. 2014. p. 239-245. (Advances in Intelligent Systems and Computing). doi: 10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Abstract

Publication series

Conference

UN SDGs

Keywords

Access to Document

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