Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Alejandra Zárate-Potes; Luis Fernando Cadavid

doi:10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Alejandra Zárate-Potes, Luis Fernando Cadavid

Biology

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding (ISBN) › peer-review

2 Citations (Scopus)

Abstract

Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....

Original language	English
Title of host publication	Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013
Publisher	Springer Verlag
Pages	239-245
Number of pages	7
ISBN (Print)	9783319015675
DOIs	https://doi.org/10.1007/978-3-319-01568-2_34
Publication status	Published - 1 Jan 2014
Event	2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013 - Manizales, Colombia Duration: 25 Sept 2013 → 27 Sept 2013

Publication series

Name	Advances in Intelligent Systems and Computing
Volume	232
ISSN (Print)	2194-5357

Conference

Conference	2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013
Country/Territory	Colombia
City	Manizales
Period	25/09/13 → 27/09/13

Keywords

Cnidaria
High throughput sequencing
Hydractinia symbiolongicarpus
Immunology
Transcriptomics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1007/978-3-319-01568-2_34

Cite this

Zárate-Potes, A., & Cadavid, L. F. (2014). Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. In Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013 (pp. 239-245). (Advances in Intelligent Systems and Computing; Vol. 232). Springer Verlag. https://doi.org/10.1007/978-3-319-01568-2_34

Zárate-Potes, Alejandra ; Cadavid, Luis Fernando. / Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag, 2014. pp. 239-245 (Advances in Intelligent Systems and Computing).

@inproceedings{f4a0f78e40564dc6b804cf0c424adcc1,

title = "Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods",

abstract = "Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....",

keywords = "Cnidaria, High throughput sequencing, Hydractinia symbiolongicarpus, Immunology, Transcriptomics",

author = "Alejandra Z{\'a}rate-Potes and Cadavid, {Luis Fernando}",

year = "2014",

month = jan,

day = "1",

doi = "10.1007/978-3-319-01568-2_34",

language = "English",

isbn = "9783319015675",

series = "Advances in Intelligent Systems and Computing",

publisher = "Springer Verlag",

pages = "239--245",

booktitle = "Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013",

address = "Germany",

note = "2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013 ; Conference date: 25-09-2013 Through 27-09-2013",

}

Zárate-Potes, A & Cadavid, LF 2014, Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. in Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Advances in Intelligent Systems and Computing, vol. 232, Springer Verlag, pp. 239-245, 2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013, Manizales, Colombia, 25/09/13. https://doi.org/10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. / Zárate-Potes, Alejandra; Cadavid, Luis Fernando.
Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag, 2014. p. 239-245 (Advances in Intelligent Systems and Computing; Vol. 232).

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding (ISBN) › peer-review

TY - GEN

T1 - Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

AU - Zárate-Potes, Alejandra

AU - Cadavid, Luis Fernando

PY - 2014/1/1

Y1 - 2014/1/1

N2 - Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....

AB - Cnidarians are ecologically important animals in marine ecosystems like coral reefs, where the incidence of disease has raised in the past years due to numerous environmental changes. In this work, messenger (m)RNA samples from cultured colonies of the hydrozoan Hydractinia symbiolongicarpus were sequenced using the Illumina platform. The Trinity program was used to assemble the transcriptome de novo and 116.924 contigs were obtained and were annotated by comparisons with public databases. The immunotranscriptome was characterized by a great diversity of transcripts coding for adhesion molecules and peptidases. Through sequencing with the Illumina platform we obtained a transcriptome draft for the organism H. symbiolongicarpus from which a large set of immune-related molecules was obtained....

KW - Cnidaria

KW - High throughput sequencing

KW - Hydractinia symbiolongicarpus

KW - Immunology

KW - Transcriptomics

UR - http://www.scopus.com/inward/record.url?scp=84894784873&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84894784873&partnerID=8YFLogxK

UR - https://www.mendeley.com/catalogue/22e668d1-718a-3c63-8cdf-7b0b32d395d7/

U2 - 10.1007/978-3-319-01568-2_34

DO - 10.1007/978-3-319-01568-2_34

M3 - Conference proceeding (ISBN)

AN - SCOPUS:84894784873

SN - 9783319015675

T3 - Advances in Intelligent Systems and Computing

SP - 239

EP - 245

BT - Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013

PB - Springer Verlag

T2 - 2nd Colombian Congress on Computational Biology and Bioinformatics, CCBCOL 2013

Y2 - 25 September 2013 through 27 September 2013

ER -

Zárate-Potes A, Cadavid LF. Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods. In Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer Verlag. 2014. p. 239-245. (Advances in Intelligent Systems and Computing). doi: 10.1007/978-3-319-01568-2_34

Transcriptomics of the immune system of hydrozoan Hydractinia symbiolongicarpus using high throughput sequencing methods

Abstract

Publication series

Conference

Keywords

UN SDGs

Access to Document

Other files and links

Fingerprint

Cite this